Modeling EEG Resting-State Brain Dynamics: A proof of concept for clinical studies

Sonja A. Kotz, Aland Astudillo, David Araya, Simone Dalla Bella, Nelson J. Trujillo-Barreto, Wael El-Deredy. (2023). bioRxiv doi: https://doi.org/10.1101/2023.04.15.536991

Dynamically learning the meaning of deceptive cues about pain

Emily Hird, Deborah Talmi, Wael El-Deredy. (2023). PsyArXiv doi: 10.31234/osf.io/4gu9d.

Group-wise cortical parcellation based on structural connectivity and hierarchical clustering

Joaquín Molina, Cristóbal Mendoza, Claudio Román, Josselin Houenou, Cyril Poupon, Jean François Mangin, Wael El-Deredy, Cecilia Hernández, Pamela Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.2670138

Fiber bundles simulator using exponential curves to validate fiber clustering algorithms

Elida Poo, Carlos Kublik, Josselin Houenou, Cyril Poupon, Jean-François Mangin, Cecilia Hernández, Pamela Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.2669811

Superficial white matter shape characterization using hierarchical clustering and a multi-subject bundle atlas

C Mendoza, C Román, J Molina, C Poupon, J-F Mangin, C Hernández, P Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.2669738

A mean-field model of glutamate and GABA synaptic dynamics for functional MRS

Caroline A Lea-Carnall, Wael El-Deredy, Charlotte J Stagg, Stephen R Williams, Nelson J Trujillo-Barreto (2023). NeuroImage, 266. doi: https://doi.org/10.1016/j.neuroimage.2022.119813

Noise-modulated multistable synapses in a Wilson-Cowan-based model of plasticity

Caroline A Lea-Carnall, Lisabel I Tanner, Marcelo A Montemurro (2023). Frontiers in Computational Neuroscience, 17. doi: https://doi.org/10.3389/fncom.2023.1017075

Source space connectomics of neurodegeneration: one-metric approach does not fit all

Pavel Prado, Sebastian Moguilner, Jhony A Mejía, Agustín Sainz-Ballesteros, Mónica Otero, Agustina Birba, Hernando Santamaria-Garcia, Agustina Legaz, Sol Fittipaldi, Josephine Cruzat, Enzo Tagliazucchi, Mario Parra, Rubén Herzog, Agustín Ibáñez (2023). Neurobiology of Disease, 179, 106047. doi: https://doi.org/10.1016/j.nbd.2023.106047

Beyond global synchrony: equivalence between Kuramoto oscillators and Wilson-Cowan model for large-scale brain networks

Ahmed H. Abd-Elrazik, Felipe A. Torres, Mónica Otero, Caroline A. Lea-Carnall & Wael El-Deredy (2023). Conference Paper at SIPAIM 2022. March 2023. doi: 10.1117/12.2670120

Federated learning enables big data for rare cancer boundary detection

Sarthak Pati, ..., Pamela Guevara, ... et al. (2022). Nature communications. doi: https://doi.org/10.1038/s41467-022-33407-5

Brain volumetric correlates of remotely versus in-person administered symbol digit modalities test in multiple sclerosis

Korhan Buyukturkoglu, Jordan D Dworkin, Victor Leiva, Frank A Provenzano, Pamela Guevara, Philip L De Jager, Victoria M Leavitt, Claire S Riley (2022). Multiple Sclerosis and Related Disorders, 68, December 2022, 104247. doi: https://doi.org/10.1016/j.msard.2022.104247

Superficial white matter bundle atlas based on hierarchical fiber clustering over probabilistic tractography data

Claudio Román, Cecilia Hernández, Miguel Figueroa, Josselin Houenou, Cyril Poupon, Jean-François Mangin, Pamela Guevara (2022). NeuroImage, 262, 15 November 2022, 119550. doi: https://doi.org/10.1016/j.neuroimage.2022.119550

Disentangling the variability of the superficial white matter organization using regional-tractogram-based population stratification

Miguel Guevara, Zhong-Yi Sun, Pamela Guevara, Denis Rivière, Antoine Grigis, Cyril Poupon, Jean-François Mangin (2022). NeuroImage, 255, 15 July 2022, 119197. doi: https://doi.org/10.1016/j.neuroimage.2022.119197

Relationship of Superficial White Matter Integrity and Cognition in Early MS: A Machine Learning Study

Korhan Buyukturkoglu, Ceren Tozlu, Christopher Vergara, Valentina Fuentealba, Jacob Dahan, Amy Kuceyeski, James Sumowski, Carlos Guevara Oliva, Ranganatha Sitaram, Claire Riley, Pamela Guevara, Victoria Leavitt (2022). Neurology Volumen 98 Número 18 Supplement May 03, 2022; 98 (18 Supplement) (P18-4.010) https://n.neurology.org/content/98/18_Supplement/637

Neural Correlates of Remotely versus In-person Administered Symbol Digit Modalities Test in Multiple Sclerosis

Korhan Buyukturkoglu, Jordan D Dworkin, Victor Leiva, Frank A Provenzano, Pamela Guevara, Philip L De Jager, Victoria M Leavitt, Claire S Riley (2022). medRxiv 2022.06. 22.22276749 doi: https://doi.org/10.1101/2022.06.22.22276749

Neuropsychology and Cognition Relationship of Superficial White Matter Integrity and Cognition in Early MS: A Machine Learning Study

K Buyukturkoglu, C Tozlu, C Vergara, V Fuentealba, JB Dahan, A Kuceyeski, JF Sumowski, CS Riley, P Guevara, VM Leavitt (2022). Multiple Sclerosis Journal, 28, 1, SUPPL, 167-168.

Computational Diffusion MRI: 13th International Workshop, CDMRI 2022, Held in Conjunction with MICCAI 2022, Singapore, Singapore, September 22, 2022, Proceedings

Suheyla Cetin-Karayumak, Daan Christiaens, Matteo Figini, Pamela Guevara, Tomasz Pieciak, Elizabeth Powell, Francois Rheault (2022). Conference.

Novel advances in the characterization of dementia subtypes: from multi‐feature classification to whole brain computational models

Pavel Prado, Sebastian Moguilner, Ruben A Herzog, Mario A Parra‐Rodriguez, Monica Otero, Jhony Alejadro Mejía, Agustín Sainz, Enzo Taglizucchi, Agustin Ibáñez (2022). Alzheimer's & Dementia, 18, e059943. doi: https://doi.org/10.1002/alz.059943

Emergent stability dynamics in the human brain connectome through the inclusion of high order interactions between coupled oscillators

Antonieta Michea Karmelic, Tomás Perez-Acle, Mónica Otero Ferreiro (2022). 41st International Conference of the Chilean Computer Science Society (SCCC), 1-4. doi: 10.1109/SCCC57464.2022.10000312

Uncovering Hidden Resting State Dynamics: A New Perspective on Auditory Verbal Hallucinations

Honcamp, H., Schwartze, M., Linden, D.E.J., El-Deredy, W., Kotz, S.A. (2022). NeuroImage (Review) In Press, Journal Pre-proof. Available online 7 April 2022 doi: https://doi.org/10.1016/j.neuroimage.2022.119188

Efficient estimation of time-dependent functional connectivity using Structural Connectivity constraints

Hernan Hernandez, David Araya, Lazara Liset Gonzalez, Claudio Roman, Nelson J Trujillo-Barreto, Pamela Guevara, Wael El-Deredy (2022). bioRxiv 2022.09. 21.508847. doi: https://doi.org/10.1101/2022.09.21.508847

Altered Pain Processing Associated with Administration of Dopamine Agonist and Antagonist in Healthy Volunteers

Sarah L Martin, Anthony KP Jones, Christopher A Brown, Christopher Kobylecki, Grace A Whitaker, Wael El-Deredy, Monty A Silverdale (2022). Brain Sciences, 12(3), 351. doi: https://doi.org/10.3390/brainsci12030351

Modelling neural entrainment and its persistence: Influence of frequency of stimulation and phase at the stimulus offset

Otero, M., Lea-Carnall, C.A., Prado, P., Escobar, M.J., El-Deredy, W. (2022). Biomedical Physics & Engineering Express. Accepted Manuscript online 23 March 2022. doi: 10.1088/2057-1976/ac605a

Machine learning to investigate superficial white matter integrity in early multiple sclerosis

Korhan Buyukturkoglu, Christopher Vergara, Valentina Fuentealba, Ceren Tozlu, Jacob B Dahan, Britta E Carroll, Amy Kuceyeski, Claire S Riley, James F Sumowski, Carlos Guevara Oliva, Ranganatha Sitaram, Pamela Guevara, Victoria M Leavitt (2022). Journal of Neuroimaging, 32, 1, 36-47, First published: 17 September 2021. doi: https://doi.org/10.1111/jon.12934

Biophysical Modelling of Frequency Dependent Neural Entrainment and Its Persistence

Mónica Otero (2021). International Journal of Psychophysiology, 168, Issue Supplement, October 2021 (S55-S56).

Modelling neural entrainment and its persistence: Influence of frequency of stimulation and phase at the stimulus offset

Otero, M., Lea-Carnall, C.A., Prado, P., Escobar, M-J. & El-Deredy, W. (2021). bioRxiv. doi: https://doi.org/10.1101/2021.09.10.459802

Frequency Dependent Plasticity

Lea-Carnall, C. A. (2021). International journal of psychophysiology: official journal of the International Organization of Psychophysiology 168:S56. October 2021. doi: 10.1016/j.ijpsycho.2021.07.169

From synaptic activity to human in vivo quantification of neurotransmitter dynamics: A neural modelling approach

Lea-Carnall, C. A., El-Deredy, W., Williams, S. R., Stagg, C. J. & Trujillo-Barreto, N. J., 12 Mar 2021. bioRxiv doi: 10.1101/2021.03.11.434540

GABA modulates frequency-dependent plasticity in humans

Lea-Carnall, C. A., Williams, S. R., Nezhad, F. S., Trujillo-Barreto, N. J., Montemurro, M. A., El-Deredy, W., & Parkes, L. M. (2020). iScience, 101657. doi: 10.1016/j.isci.2020.101657

Cortical ignition dynamics is tightly linked to the core organisation of the human connectome

Castro, S., El-Deredy, W., Battaglia, D. & Orio, P. (2020). PloS Computational Biology. doi: https://doi.org/10.1371/journal.pcbi.1007686

C‐low threshold mechanoafferent targeted dynamic touch modulates stress resilience in rats exposed to chronic mild stress

Walker, S. C., Cavieres, A., Peñaloza‐Sancho, V., El‐Deredy, W., McGlone, F. P. & Dagnino‐Subiabre, A. (2020). European Journal of Neuroscience. doi: https://doi.org/10.1111/ejn.14951

Individuals with chronic pain have the same response to placebo analgesia as healthy controls in terms of magnitude and reproducibility

Andrea Power, Christopher Andrew Brown, Manoj Sivan, Ann Lenton, Timothy Rainey, Wael El-Deredy, Peter Jones AK and Alison Watson. (2020). Pain. doi: 10.1097/j.pain.0000000000001966.

Persistence of EEG Alpha Entrainment Depends on Stimulus Phase at Offset

Otero, M., Prado-Gutiérrez, P., Weinstein, A., Escobar, M. J. & El-Deredy, W. (2020). Frontiers in Human Neuroscience, 14, 139. doi: https://doi.org/10.3389/fnhum.2020.00139

Entraining alpha activity using visual stimulation in patients with chronic musculoskeletal pain. A feasibility study

Arendsen, Laura J., James Henshaw, Christopher A. Brown, Manoj Sivan, Jason R. Taylor, Nelson J. Trujillo-Barreto, Alexander J. Casson and Anthony KP Jones. (2020). bioRxiv https://www.biorxiv.org/content/10.1101/2020.04.27.063339v1.abstract

A tutorial and tool for exploring feature similarity gradients with MRI data

Bajada, Claude, Lucas Q. Costa Campos, Svenja Caspers, Richard Muscat, Matthew A. Lambon Ralph, Geoff Parker, Lauren L. Cloutman, and Nelson J. Trujillo-Barreto. (2020). Psyarxiv. https://psyarxiv.com/7vzbk/

A structural connectivity convergence zone in the ventral and anterior temporal lobes: data-driven evidence from structural imaging

Bajada, C. J., Trujillo-Barreto, N. J., Parker, G. J., Cloutman, L. L., & Ralph, M. A. L. (2019). Cortex, 120, 298-307

Boundary effects of expectation in human pain perception

Hird, E. J., Charalambous, C., El-Deredy, W., Jones, A. K., & Talmi, D. (2019). Scientific reports, 9(1), 1-13

Fuzzy general linear modeling for functional magnetic resonance imaging analysis

Alejandro Veloz, Claudio Moraga, Alejandro Weinstein, Luis Hernández-García, Steren Chabert, Rodrigo Salas, Rodrigo Riveros, Carlos Bennett, and Héctor Allende. IEEE Transactions on Fuzzy Systems 28, no. 1 (2019): 100-111

Improving EEG Muscle Artifact Removal With an EMG Array

Mucarquer, J. A., Prado, P., Escobar, M. J., El-Deredy, W., & Zañartu, M. (2019). IEEE Transactions on Instrumentation and Measurement, 69(3), 815-824

Ant Colony Clustering for ROI Identification in Functional Magnetic Resonance Imaging

Veloz, A., Weinstein, A., Pszczolkowski, S., Hernández-García, L., Olivares, R., Muñoz, R., & Taramasco, C. (2019). Computational Intelligence and Neuroscience, 2019

A method for tracking the time evolution of steady-state evoked potentials

Prado-Gutiérrez, P., Otero, M., Martínez-Montes, E., Weinstein, A., Escobar, M. J., El-Deredy, W., & Zañartu, M. (2019). JoVE Journal of Visualized Experiments, 147, e59898

Neurophysiological Muscle Activation Scheme for Controlling Vocal Fold Models

Manríquez, R., Peterson, S. D., Prado, P., Orio, P., Galindo, G. E., & Zañartu, M. (2019). IEEE Transactions on Neural Systems and Rehabilitation Engineering, 27(5), 1043-1052

Use of accelerometers for automatic regional chest movement recognition during tidal breathing in healthy subjects

De la Fuente, C., Weinstein, A., Guzman-Venegas, R., Arenas, J., Cartes, J., Soto, M., & Carpes, F. P. (2019). Journal of Electromyography and Kinesiology, 47, 105-112

Chirp analyzer for estimating amplitude and latency of steady-state auditory envelope following responses

Martínez-Montes, E., García-Puente, Y., Zañartu, M., & Prado-Gutiérrez, P. (2019). bioRxiv, 700054

The discrete logic of the Brain-Explicit modelling of Brain State durations in EEG and MEG

Trujillo-Barreto, N. J., Araya, D., & El-Deredy, W. (2019). https://doi.org/10.1101/635300

Limbic-visual attenuation to crying faces underlies neglectful mothering.

León, I., Rodrigo, M. J., El-Deredy, W., Modroño, C., Hernández-Cabrera, J. A., & Quiñones, I. (2019). Scientific reports, 9(1), 6373 https://doi-org.manchester.idm.oclc.org/10.1038/s41598-019-42908-1

Sensitivity to pain expectations: A Bayesian model of individual differences

R Hoskin, C Berzuini, D Acosta-Kane, W El-Deredy, H Guo, D Talmi (2019) Cognition 182, 127-139

Identification of memory reactivation during sleep by EEG classification

Suliman Belal, James Cousins, Wael El-Deredy, Laura Parkes, Jules Schneider, Hikaru Tsujimura, Alexia Zoumpoulaki, Marta Perapoch, Lorena Santamaria, Penelope Lewis. (2018). NeuroImage 176, 203-214

Temporal dissociation of salience and prediction error responses to appetitive and aversive taste

EJ Hird, W El‐Deredy, A Jones, D Talmi (2018) Psychophysiology 55 (2), e12976

A comparison between the neural correlates of laser and electric pain stimulation and their modulation by expectation

EJ Hird, AKP Jones, D Talmi, W El-Deredy. (2020). Journal of Neuroscience methods 293, 117-127

A re-examination of “bias” in human randomness perception

PA Warren, U Gostoli, GD Farmer, W El-Deredy, U Hahn. (2017). American Psychological Association

The effect of expected value on attraction effect preference reversals

GD Farmer, PA Warren, W El‐Deredy, A Howes (2017). Journal of Behavioral Decision Making 30 (4), 785-793

Evidence for frequency-dependent cortical plasticity in the human brain

Caroline A Lea-Carnall, Nelson J Trujillo-Barreto, Marcelo A Montemurro, Wael El-Deredy, Laura M Parkes (2017). Proceedings of the National Academy of Sciences 114 (33), 8871-8876

Effects of acute ketamine infusion on visual working memory: event-related potentials

I Koychev, JFW Deakin, W El-Deredy, C Haenschel (2017). Biological Psychiatry: Cognitive Neuroscience and Neuroimaging 2 (3), 253-262

Pre-stimulus alpha oscillations over somatosensory cortex predict tactile misperceptions

M Craddock, E Poliakoff, W El-deredy, E Klepousniotou, DM Lloyd (2017).
Neuropsychologia 96, 9-18

Good vibrations: Global processing can increase the pleasantness of touch

L Mirams, E Poliakoff, EH Zandstra, M Hoeksma, A Thomas, W El-Deredy (2016). The Quarterly Journal of Experimental Psychology 69 (12), 2471-2486

A systematic review of efficacy of the attention training technique in clinical and nonclinical samples

MM Knowles, P Foden, W El‐Deredy, A Wells (2016). Journal of Clinical Psychology 72 (10), 999-1025

Why contextual preference reversals maximize expected value

A Howes, PA Warren, G Farmer, W El-Deredy, RL Lewis (2016). Psychological review 123 (4), 368

I feel bad and look worse than you: Social comparisons moderate the effect of mood on face health judgement

L Mirams, E Poliakoff, EH Zandstra, M Hoeksma, A Thomas, W El-Deredy (2016). Acta Psychologica 168, 12-19

The functional role of neural oscillations in non-verbal emotional communication

AE Symons, W El-Deredy, M Schwartze, SA Kotz (2016). Frontiers in Human Neuroscience 10, 239

Cued reactivation of motor learning during sleep leads to overnight changes in functional brain activity and connectivity

JN Cousins, W El-Deredy, LM Parkes, N Hennies, PA Lewis (2016). PLoS biology 14 (5), e1002451

Cortical resonance frequencies emerge from network size and connectivity

CA Lea-Carnall, MA Montemurro, NJ Trujillo-Barreto, LM Parkes, ... (2016). PLoS Computational Biology 12 (2), e1004740

Attentional bias predicts increased reward salience and risk taking in bipolar disorder

L Mason, NJ Trujillo-Barreto, RP Bentall, W El-Deredy (2016). Biological Psychiatry 79 (4), 311-319

Fitting Human Decision Making Models using Python

A Weinstein, W El-Deredy, S Chabert, M Fuentes