Publications
Laboratory that studies brain dynamics through mathematical and statistical algorithms
Publications year
2023
1
Modeling EEG Resting-State Brain Dynamics: A proof of concept for clinical studies
Sonja A. Kotz, Aland Astudillo, David Araya, Simone Dalla Bella, Nelson J. Trujillo-Barreto, Wael El-Deredy. (2023). bioRxiv doi: https://doi.org/10.1101/2023.04.15.5369912
Dynamically learning the meaning of deceptive cues about pain
Emily Hird, Deborah Talmi, Wael El-Deredy. (2023). PsyArXiv doi: 10.31234/osf.io/4gu9d.3
Group-wise cortical parcellation based on structural connectivity and hierarchical clustering
Joaquín Molina, Cristóbal Mendoza, Claudio Román, Josselin Houenou, Cyril Poupon, Jean François Mangin, Wael El-Deredy, Cecilia Hernández, Pamela Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.2670138
4
Fiber bundles simulator using exponential curves to validate fiber clustering algorithms
Elida Poo, Carlos Kublik, Josselin Houenou, Cyril Poupon, Jean-François Mangin, Cecilia Hernández, Pamela Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.26698115
Superficial white matter shape characterization using hierarchical clustering and a multi-subject bundle atlas
C Mendoza, C Román, J Molina, C Poupon, J-F Mangin, C Hernández, P Guevara (2023). Conference 18th International Symposium on Medical Information Processing and Analysis, 12567, 172-181, SPIE. Proceedings Volume 12567, Event: 18th International Symposium on Medical Information Processing and Analysis, 2022, Valparaíso, Chile. doi: https://doi.org/10.1117/12.26697386
A mean-field model of glutamate and GABA synaptic dynamics for functional MRS
Caroline A Lea-Carnall, Wael El-Deredy, Charlotte J Stagg, Stephen R Williams, Nelson J Trujillo-Barreto (2023). NeuroImage, 266. doi: https://doi.org/10.1016/j.neuroimage.2022.1198137
Noise-modulated multistable synapses in a Wilson-Cowan-based model of plasticity
Caroline A Lea-Carnall, Lisabel I Tanner, Marcelo A Montemurro (2023). Frontiers in Computational Neuroscience, 17. doi: https://doi.org/10.3389/fncom.2023.10170758
Source space connectomics of neurodegeneration: one-metric approach does not fit all
Pavel Prado, Sebastian Moguilner, Jhony A Mejía, Agustín Sainz-Ballesteros, Mónica Otero, Agustina Birba, Hernando Santamaria-Garcia, Agustina Legaz, Sol Fittipaldi, Josephine Cruzat, Enzo Tagliazucchi, Mario Parra, Rubén Herzog, Agustín Ibáñez (2023). Neurobiology of Disease, 179, 106047. doi: https://doi.org/10.1016/j.nbd.2023.1060479
Beyond global synchrony: equivalence between Kuramoto oscillators and Wilson-Cowan model for large-scale brain networks
Ahmed H. Abd-Elrazik, Felipe A. Torres, Mónica Otero, Caroline A. Lea-Carnall & Wael El-Deredy (2023). Conference Paper at SIPAIM 2022. March 2023. doi: 10.1117/12.2670120Publications year
2022
1
Federated learning enables big data for rare cancer boundary detection
Sarthak Pati, ..., Pamela Guevara, ... et al. (2022). Nature communications. doi: https://doi.org/10.1038/s41467-022-33407-52
Brain volumetric correlates of remotely versus in-person administered symbol digit modalities test in multiple sclerosis
Korhan Buyukturkoglu, Jordan D Dworkin, Victor Leiva, Frank A Provenzano, Pamela Guevara, Philip L De Jager, Victoria M Leavitt, Claire S Riley (2022). Multiple Sclerosis and Related Disorders, 68, December 2022, 104247. doi: https://doi.org/10.1016/j.msard.2022.1042473
Superficial white matter bundle atlas based on hierarchical fiber clustering over probabilistic tractography data
Claudio Román, Cecilia Hernández, Miguel Figueroa, Josselin Houenou, Cyril Poupon, Jean-François Mangin, Pamela Guevara (2022). NeuroImage, 262, 15 November 2022, 119550. doi: https://doi.org/10.1016/j.neuroimage.2022.1195504
Disentangling the variability of the superficial white matter organization using regional-tractogram-based population stratification
Miguel Guevara, Zhong-Yi Sun, Pamela Guevara, Denis Rivière, Antoine Grigis, Cyril Poupon, Jean-François Mangin (2022). NeuroImage, 255, 15 July 2022, 119197. doi: https://doi.org/10.1016/j.neuroimage.2022.1191975
Relationship of Superficial White Matter Integrity and Cognition in Early MS: A Machine Learning Study
Korhan Buyukturkoglu, Ceren Tozlu, Christopher Vergara, Valentina Fuentealba, Jacob Dahan, Amy Kuceyeski, James Sumowski, Carlos Guevara Oliva, Ranganatha Sitaram, Claire Riley, Pamela Guevara, Victoria Leavitt (2022). Neurology Volumen 98 Número 18 Supplement May 03, 2022; 98 (18 Supplement) (P18-4.010) https://n.neurology.org/content/98/18_Supplement/6376
Neural Correlates of Remotely versus In-person Administered Symbol Digit Modalities Test in Multiple Sclerosis
Korhan Buyukturkoglu, Jordan D Dworkin, Victor Leiva, Frank A Provenzano, Pamela Guevara, Philip L De Jager, Victoria M Leavitt, Claire S Riley (2022). medRxiv 2022.06. 22.22276749 doi: https://doi.org/10.1101/2022.06.22.222767497
Neuropsychology and Cognition Relationship of Superficial White Matter Integrity and Cognition in Early MS: A Machine Learning Study
K Buyukturkoglu, C Tozlu, C Vergara, V Fuentealba, JB Dahan, A Kuceyeski, JF Sumowski, CS Riley, P Guevara, VM Leavitt (2022). Multiple Sclerosis Journal, 28, 1, SUPPL, 167-168.8
Computational Diffusion MRI: 13th International Workshop, CDMRI 2022, Held in Conjunction with MICCAI 2022, Singapore, Singapore, September 22, 2022, Proceedings
Suheyla Cetin-Karayumak, Daan Christiaens, Matteo Figini, Pamela Guevara, Tomasz Pieciak, Elizabeth Powell, Francois Rheault (2022). Conference.9
Novel advances in the characterization of dementia subtypes: from multi‐feature classification to whole brain computational models
Pavel Prado, Sebastian Moguilner, Ruben A Herzog, Mario A Parra‐Rodriguez, Monica Otero, Jhony Alejadro Mejía, Agustín Sainz, Enzo Taglizucchi, Agustin Ibáñez (2022). Alzheimer's & Dementia, 18, e059943. doi: https://doi.org/10.1002/alz.05994310
Emergent stability dynamics in the human brain connectome through the inclusion of high order interactions between coupled oscillators
Antonieta Michea Karmelic, Tomás Perez-Acle, Mónica Otero Ferreiro (2022). 41st International Conference of the Chilean Computer Science Society (SCCC), 1-4. doi: 10.1109/SCCC57464.2022.1000031211
Uncovering Hidden Resting State Dynamics: A New Perspective on Auditory Verbal Hallucinations
Honcamp, H., Schwartze, M., Linden, D.E.J., El-Deredy, W., Kotz, S.A. (2022). NeuroImage (Review) In Press, Journal Pre-proof. Available online 7 April 2022 doi: https://doi.org/10.1016/j.neuroimage.2022.11918812
Efficient estimation of time-dependent functional connectivity using Structural Connectivity constraints
Hernan Hernandez, David Araya, Lazara Liset Gonzalez, Claudio Roman, Nelson J Trujillo-Barreto, Pamela Guevara, Wael El-Deredy (2022). bioRxiv 2022.09. 21.508847. doi: https://doi.org/10.1101/2022.09.21.50884713
Altered Pain Processing Associated with Administration of Dopamine Agonist and Antagonist in Healthy Volunteers
Sarah L Martin, Anthony KP Jones, Christopher A Brown, Christopher Kobylecki, Grace A Whitaker, Wael El-Deredy, Monty A Silverdale (2022). Brain Sciences, 12(3), 351. doi: https://doi.org/10.3390/brainsci1203035114
Modelling neural entrainment and its persistence: Influence of frequency of stimulation and phase at the stimulus offset
Otero, M., Lea-Carnall, C.A., Prado, P., Escobar, M.J., El-Deredy, W. (2022). Biomedical Physics & Engineering Express. Accepted Manuscript online 23 March 2022. doi: 10.1088/2057-1976/ac605a15
Machine learning to investigate superficial white matter integrity in early multiple sclerosis
Korhan Buyukturkoglu, Christopher Vergara, Valentina Fuentealba, Ceren Tozlu, Jacob B Dahan, Britta E Carroll, Amy Kuceyeski, Claire S Riley, James F Sumowski, Carlos Guevara Oliva, Ranganatha Sitaram, Pamela Guevara, Victoria M Leavitt (2022). Journal of Neuroimaging, 32, 1, 36-47, First published: 17 September 2021. doi: https://doi.org/10.1111/jon.12934Publications year
2021
1
Biophysical Modelling of Frequency Dependent Neural Entrainment and Its Persistence
Mónica Otero (2021). International Journal of Psychophysiology, 168, Issue Supplement, October 2021 (S55-S56).2
Modelling neural entrainment and its persistence: Influence of frequency of stimulation and phase at the stimulus offset
Otero, M., Lea-Carnall, C.A., Prado, P., Escobar, M-J. & El-Deredy, W. (2021). bioRxiv. doi: https://doi.org/10.1101/2021.09.10.4598023
Frequency Dependent Plasticity
Lea-Carnall, C. A. (2021). International journal of psychophysiology: official journal of the International Organization of Psychophysiology 168:S56. October 2021. doi: 10.1016/j.ijpsycho.2021.07.1694
From synaptic activity to human in vivo quantification of neurotransmitter dynamics: A neural modelling approach
Lea-Carnall, C. A., El-Deredy, W., Williams, S. R., Stagg, C. J. & Trujillo-Barreto, N. J., 12 Mar 2021. bioRxiv doi: 10.1101/2021.03.11.434540Publications year
2020
1
GABA modulates frequency-dependent plasticity in humans
Lea-Carnall, C. A., Williams, S. R., Nezhad, F. S., Trujillo-Barreto, N. J., Montemurro, M. A., El-Deredy, W., & Parkes, L. M. (2020). iScience, 101657. doi: 10.1016/j.isci.2020.1016572
Cortical ignition dynamics is tightly linked to the core organisation of the human connectome
Castro, S., El-Deredy, W., Battaglia, D. & Orio, P. (2020). PloS Computational Biology. doi: https://doi.org/10.1371/journal.pcbi.10076863
C‐low threshold mechanoafferent targeted dynamic touch modulates stress resilience in rats exposed to chronic mild stress
Walker, S. C., Cavieres, A., Peñaloza‐Sancho, V., El‐Deredy, W., McGlone, F. P. & Dagnino‐Subiabre, A. (2020). European Journal of Neuroscience. doi: https://doi.org/10.1111/ejn.149514
Individuals with chronic pain have the same response to placebo analgesia as healthy controls in terms of magnitude and reproducibility
Andrea Power, Christopher Andrew Brown, Manoj Sivan, Ann Lenton, Timothy Rainey, Wael El-Deredy, Peter Jones AK and Alison Watson. (2020). Pain. doi: 10.1097/j.pain.0000000000001966.5
Persistence of EEG Alpha Entrainment Depends on Stimulus Phase at Offset
Otero, M., Prado-Gutiérrez, P., Weinstein, A., Escobar, M. J. & El-Deredy, W. (2020). Frontiers in Human Neuroscience, 14, 139. doi: https://doi.org/10.3389/fnhum.2020.001396
Entraining alpha activity using visual stimulation in patients with chronic musculoskeletal pain. A feasibility study
Arendsen, Laura J., James Henshaw, Christopher A. Brown, Manoj Sivan, Jason R. Taylor, Nelson J. Trujillo-Barreto, Alexander J. Casson and Anthony KP Jones. (2020). bioRxiv https://www.biorxiv.org/content/10.1101/2020.04.27.063339v1.abstract7
A tutorial and tool for exploring feature similarity gradients with MRI data
Bajada, Claude, Lucas Q. Costa Campos, Svenja Caspers, Richard Muscat, Matthew A. Lambon Ralph, Geoff Parker, Lauren L. Cloutman, and Nelson J. Trujillo-Barreto. (2020). Psyarxiv. https://psyarxiv.com/7vzbk/Publications year
2019
1
A structural connectivity convergence zone in the ventral and anterior temporal lobes: data-driven evidence from structural imaging
Bajada, C. J., Trujillo-Barreto, N. J., Parker, G. J., Cloutman, L. L., & Ralph, M. A. L. (2019). Cortex, 120, 298-3072
Boundary effects of expectation in human pain perception
Hird, E. J., Charalambous, C., El-Deredy, W., Jones, A. K., & Talmi, D. (2019). Scientific reports, 9(1), 1-133
Fuzzy general linear modeling for functional magnetic resonance imaging analysis
Alejandro Veloz, Claudio Moraga, Alejandro Weinstein, Luis Hernández-García, Steren Chabert, Rodrigo Salas, Rodrigo Riveros, Carlos Bennett, and Héctor Allende. IEEE Transactions on Fuzzy Systems 28, no. 1 (2019): 100-1114
Improving EEG Muscle Artifact Removal With an EMG Array
Mucarquer, J. A., Prado, P., Escobar, M. J., El-Deredy, W., & Zañartu, M. (2019). IEEE Transactions on Instrumentation and Measurement, 69(3), 815-8245
Ant Colony Clustering for ROI Identification in Functional Magnetic Resonance Imaging
Veloz, A., Weinstein, A., Pszczolkowski, S., Hernández-García, L., Olivares, R., Muñoz, R., & Taramasco, C. (2019). Computational Intelligence and Neuroscience, 20196
A method for tracking the time evolution of steady-state evoked potentials
Prado-Gutiérrez, P., Otero, M., Martínez-Montes, E., Weinstein, A., Escobar, M. J., El-Deredy, W., & Zañartu, M. (2019). JoVE Journal of Visualized Experiments, 147, e598987
Neurophysiological Muscle Activation Scheme for Controlling Vocal Fold Models
Manríquez, R., Peterson, S. D., Prado, P., Orio, P., Galindo, G. E., & Zañartu, M. (2019). IEEE Transactions on Neural Systems and Rehabilitation Engineering, 27(5), 1043-10528
Use of accelerometers for automatic regional chest movement recognition during tidal breathing in healthy subjects
De la Fuente, C., Weinstein, A., Guzman-Venegas, R., Arenas, J., Cartes, J., Soto, M., & Carpes, F. P. (2019). Journal of Electromyography and Kinesiology, 47, 105-1129
Chirp analyzer for estimating amplitude and latency of steady-state auditory envelope following responses
Martínez-Montes, E., García-Puente, Y., Zañartu, M., & Prado-Gutiérrez, P. (2019). bioRxiv, 70005410
The discrete logic of the Brain-Explicit modelling of Brain State durations in EEG and MEG
Trujillo-Barreto, N. J., Araya, D., & El-Deredy, W. (2019). https://doi.org/10.1101/63530011
Limbic-visual attenuation to crying faces underlies neglectful mothering.
León, I., Rodrigo, M. J., El-Deredy, W., Modroño, C., Hernández-Cabrera, J. A., & Quiñones, I. (2019). Scientific reports, 9(1), 6373 https://doi-org.manchester.idm.oclc.org/10.1038/s41598-019-42908-112
Sensitivity to pain expectations: A Bayesian model of individual differences
R Hoskin, C Berzuini, D Acosta-Kane, W El-Deredy, H Guo, D Talmi (2019) Cognition 182, 127-139Publications year
2018
1
Identification of memory reactivation during sleep by EEG classification
Suliman Belal, James Cousins, Wael El-Deredy, Laura Parkes, Jules Schneider, Hikaru Tsujimura, Alexia Zoumpoulaki, Marta Perapoch, Lorena Santamaria, Penelope Lewis. (2018). NeuroImage 176, 203-2142
Temporal dissociation of salience and prediction error responses to appetitive and aversive taste
EJ Hird, W El‐Deredy, A Jones, D Talmi (2018) Psychophysiology 55 (2), e129763
A comparison between the neural correlates of laser and electric pain stimulation and their modulation by expectation
EJ Hird, AKP Jones, D Talmi, W El-Deredy. (2020). Journal of Neuroscience methods 293, 117-127Publications year
2017
1
A re-examination of “bias” in human randomness perception
PA Warren, U Gostoli, GD Farmer, W El-Deredy, U Hahn. (2017). American Psychological Association2
The effect of expected value on attraction effect preference reversals
GD Farmer, PA Warren, W El‐Deredy, A Howes (2017). Journal of Behavioral Decision Making 30 (4), 785-7933
Evidence for frequency-dependent cortical plasticity in the human brain
Caroline A Lea-Carnall, Nelson J Trujillo-Barreto, Marcelo A Montemurro, Wael El-Deredy, Laura M Parkes (2017). Proceedings of the National Academy of Sciences 114 (33), 8871-88764
Effects of acute ketamine infusion on visual working memory: event-related potentials
I Koychev, JFW Deakin, W El-Deredy, C Haenschel (2017). Biological Psychiatry: Cognitive Neuroscience and Neuroimaging 2 (3), 253-2625
Pre-stimulus alpha oscillations over somatosensory cortex predict tactile misperceptions
M Craddock, E Poliakoff, W El-deredy, E Klepousniotou, DM Lloyd (2017).Neuropsychologia 96, 9-18
Publications year
2016
1
Good vibrations: Global processing can increase the pleasantness of touch
L Mirams, E Poliakoff, EH Zandstra, M Hoeksma, A Thomas, W El-Deredy (2016). The Quarterly Journal of Experimental Psychology 69 (12), 2471-24862
A systematic review of efficacy of the attention training technique in clinical and nonclinical samples
MM Knowles, P Foden, W El‐Deredy, A Wells (2016). Journal of Clinical Psychology 72 (10), 999-10253
Why contextual preference reversals maximize expected value
A Howes, PA Warren, G Farmer, W El-Deredy, RL Lewis (2016). Psychological review 123 (4), 3684
I feel bad and look worse than you: Social comparisons moderate the effect of mood on face health judgement
L Mirams, E Poliakoff, EH Zandstra, M Hoeksma, A Thomas, W El-Deredy (2016). Acta Psychologica 168, 12-195
The functional role of neural oscillations in non-verbal emotional communication
AE Symons, W El-Deredy, M Schwartze, SA Kotz (2016). Frontiers in Human Neuroscience 10, 2396
Cued reactivation of motor learning during sleep leads to overnight changes in functional brain activity and connectivity
JN Cousins, W El-Deredy, LM Parkes, N Hennies, PA Lewis (2016). PLoS biology 14 (5), e10024517
Cortical resonance frequencies emerge from network size and connectivity
CA Lea-Carnall, MA Montemurro, NJ Trujillo-Barreto, LM Parkes, ... (2016). PLoS Computational Biology 12 (2), e10047408
Attentional bias predicts increased reward salience and risk taking in bipolar disorder
L Mason, NJ Trujillo-Barreto, RP Bentall, W El-Deredy (2016). Biological Psychiatry 79 (4), 311-3199